WebMay 30, 2024 · Fungal diversity was determined by sequencing the Internal Transcribed Spacer (ITS) region 2 58 with primers FITS7 (GTGARTCATCGAATCTTTG)/ITS4 (TCCTCCGCTTATTGATATGC) 59 … WebAssigning Taxonomy ¶. A typically command to assign taxonomy in AMPtk looks like this: amptk taxonomy -i input.otu_table.txt -f input.cluster.otus.fa -m input.mapping_file.txt -d ITS2. This command will run the default hybrid method and will use the ITS2 database ( …
New primers to amplify the fungal ITS2 region - OUP …
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